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    Taking Treatment Effects Analysis and Visualisation to Higher Levels with R

    R-Blog on Data modelling to develop ...发表于 2024-07-29 01:00:00
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    Introduction

    This blog is a new function, treatment_model that have been added to the Dyn4cast package. The function provides means for enhanced estimation of propensity score and treatments effects from randomized controlled designed experiments.

    Observational study involves the evaluation of outcomes of participants not randomly assigned treatments or exposures. To be able to assess the effects of the outcome, the participants are matched using propensity scores (PSM). This then enables the determination of the effects of the treatments on those treated against those who were not treated. Most of the earlier functions available for this analysis only enables the determination of the average treatments effects on the treated (ATT) while the other treatment effects are optional. This is where this functions is unique because five different average treatment effects are estimated simultaneously, in spite of the one line code arguments. The five treatment effects are:

    Average treatment effect for the entire (ATE) population

    Average treatment effect for the treated (ATT) population

    Average treatment effect for the controlled (ATC) population

    Average treatment effect for the evenly matched (ATM) population

    Average treatment effect for the overlap (ATO) population.

    There excellent materials dealing with each of the treatment effects, please see

    The basic usage of the codes are:

    treatment_model(Treatment, x_data)

    Arguments

    Treatment Vector of binary data (0, 1) LHS for the treatment effects estimation

    x_data Data frame of explanatory variables for the RHS of the estimation

    Let us go!

    Load library

    library(Dyn4cast)

    Estimation of treatment effects model

    Treatment <- treatments$treatment
    data <- treatments[, c(2:3)]
    treat <- treatment_model(Treatment, data)

    Estimated treatment effects model

    summary(treat)
     Length Class Mode
    P_score 500 -none- numeric
    Effect 5 data.frame list
    Fitted_estimate 500 -none- numeric
    Residuals 500 -none- numeric
    Model 30 glm list
    Experiment plot 11 gg list
    ATE plot 11 gg list
    ATT plot 11 gg list
    ATC plot 11 gg list
    ATM plot 11 gg list
    ATO plot 11 gg list
    weights 5 data.frame list 

    Estimated various treatment effects

    treat$Effect
     ATE ATT ATC ATM ATO
    1 2.465581 4.481578 -0.2272903 1.968055 2.056329

    Estimated propensity scores from the model

    head(treat$P_score)
     1 2 3 4 5 6
    0.98347730 0.97153060 0.63093981 0.69944426 0.07971976 0.90935715 

    ##Ffitted values from the model

    head(treat$Fitted_estimate)
     1 2 3 4 5 6
    0.98347730 0.97153060 0.63093981 0.69944426 0.07971976 0.90935715 

    Residuals of the estimated model

    tail(treat$Residuals)
     495 496 497 498 499 500
    -2.250645 -1.757826 1.402062 1.010765 -1.151789 1.898509 

    Plots of the propensity scores from the model

    Quite a number of plots are in the works e.g. 

    Treatment effects (ATE)

    treat$`ATE plot`

    Treatment effects on the treated (ATT)

    treat$`ATT plot`

    Treatment effects on the evenly matched (ATM)

    treat$`ATM plot`

    Welcome to the world of easy Data Science and easy Machine Learning!

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